What's it like in Harbor Island?

Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best place to stay in Harbor Island?

Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels should I expect to find in the Harbor Island area?

Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.

What is there to do around this San Diego neighbourhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or Port of San Diego.

The Best Hotels in Harbor Island, San Diego - 2026 Updated Prices

A harbor with multiple sailboats and a bridge in the background.

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Our top choices for Harbor Island hotels

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

1. Hilton San Diego Airport/Harbor Island

Harbor Island

Amos

₹17,724 total

includes taxes & fees

20 Sept - 21 Sept

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

2. Sheraton San Diego Resort

Harbor Island

Pooja

₹23,136 total

includes taxes & fees

8 Sept - 9 Sept

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

3. Hampton Inn & Suites San Diego Airport Liberty Station

0.7 km from Harbor Island

David

₹19,592 total

includes taxes & fees

5 Oct - 6 Oct

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

1 km from Harbor Island

Orlyn

₹22,177 total

includes taxes & fees

20 Sept - 21 Sept

An outdoor café with red chairs and white tables, surrounded by buildings with balconies and flags.

5. Urban Boutique Hotel

Little Italy, 3.7 km from Harbor Island

Renee

₹14,430 total

includes taxes & fees

8 Sept - 9 Sept

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

6. Holiday Inn Express San Diego Airport - Old Town by IHG

2.9 km from Harbor Island

Faleoalii Iereneo

₹16,510 total

includes taxes & fees

21 Sept - 22 Sept

A hotel room with a large bed, a desk, a chair, a painting, and a view of the city.

7. Best Western Plus Marina Gateway Hotel

11.6 km from Harbor Island

Itzel

₹15,515 total

includes taxes & fees

8 Sept - 9 Sept

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

8. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 3 km from Harbor Island

Anthony

₹14,680 total

includes taxes & fees

8 Sept - 9 Sept

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

9. Wyndham Garden San Diego Near SeaWorld

3.3 km from Harbor Island

Nayla

₹9,826 total

includes taxes & fees

13 Sept - 14 Sept

A modern building with multiple windows, outdoor seating, and a chessboard.

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3.4 km from Harbor Island

Joshua

₹15,889 total

includes taxes & fees

10 Sept - 11 Sept

An outdoor lounge area with seating, a fire feature, and a pool in the background.

11. Town and Country San Diego

5.5 km from Harbor Island

Sol

₹29,557 total

includes taxes & fees

11 Sept - 12 Sept

A hotel with a central courtyard, palm trees, and a fountain.

12. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.7 km from Harbor Island

Edward Palacios

₹13,674 total

includes taxes & fees

27 Sept - 28 Sept

A resort with two-story buildings, balconies, and a pool area.

13. Humphreys Half Moon Inn

1.8 km from Harbor Island

Laura

₹22,419 total

includes taxes & fees

8 Sept - 9 Sept

A hotel courtyard with outdoor seating, palm trees, and a view of the ocean at dusk.

14. Wyndham San Diego Bayside

3.3 km from Harbor Island

Jennifer

₹19,958 total

includes taxes & fees

20 Sept - 21 Sept

A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

15. Comfort Inn San Diego Old Town

Old Town San Diego, 2.9 km from Harbor Island

Heather

₹12,833 total

includes taxes & fees

28 Sept - 29 Sept

A balcony with a table set for two, overlooking a marina with numerous boats.

16. Bay Club Hotel & Marina

2 km from Harbor Island

Jennifer

₹17,498 total

includes taxes & fees

8 Sept - 9 Sept

An outdoor dining area with a long table and chairs, a street view, and a building with a 'P' parking sign.

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 4.8 km from Harbor Island

RheaAnn

₹14,169 total

includes taxes & fees

9 Sept - 10 Sept

A modern lobby with a stone wall, blue sofas, a reception desk, and a staircase.

18. Kings Inn San Diego

4.7 km from Harbor Island

yasir

₹9,650 total

includes taxes & fees

13 Sept - 14 Sept

A hotel lobby with a 'Lobby' sign, palm trees, and a sunset sky.

19. Best Western Seven Seas

5.5 km from Harbor Island

Colleen

₹9,189 total

includes taxes & fees

8 Sept - 9 Sept

A hotel entrance with a covered outdoor area, palm trees, and a white building with multiple windows and balconies.

20. Courtyard by Marriott Old Town

Old Town San Diego, 3 km from Harbor Island

Christine

₹16,526 total

includes taxes & fees

9 Sept - 10 Sept

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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

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Top Harbor Island Hotel Reviews

The Sofia Hotel

8/10 Good

"Stayed one night nice old charming Hotel We decided to eat at the restaurant in the hotel, nice surprise food and service was great and we got 10% off for staying at the hotel."

The DEXTRO Little Italy, BW Premier Collection

8/10 Good

"Just know if you drive you will pay $45 per day! Which is crazy for how much they charge you for rooms that were not remodeled well! I could see through the barn door of the bathroom right into the shower (thankfully I noticed before my buddy got in the shower)! Not worth the almost $600 for 2 nights"

Search Hotels in Harbor Island, San Diego

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Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

2. Sheraton San Diego Resort

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

5. Urban Boutique Hotel

6. Holiday Inn Express San Diego Airport - Old Town by IHG

7. Best Western Plus Marina Gateway Hotel

8. Fairfield Inn & Suites San Diego Old Town

9. Wyndham Garden San Diego Near SeaWorld

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

11. Town and Country San Diego

12. Hilton Garden Inn San Diego Old Town/SeaWorld Area

13. Humphreys Half Moon Inn

14. Wyndham San Diego Bayside

15. Comfort Inn San Diego Old Town

16. Bay Club Hotel & Marina

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

18. Kings Inn San Diego

19. Best Western Seven Seas

20. Courtyard by Marriott Old Town

Where to stay in Harbor Island

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Harbor Island Hotel Reviews

The Sofia Hotel

Frequently asked questions

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