What's it like in Harbor Island?

Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best place to stay in Harbor Island?

Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels should I expect to find in the Harbor Island area?

Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.

What is there to do around this San Diego neighbourhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or USS Midway Museum.

The Best Hotels in Harbor Island, San Diego - 2026 Updated Prices

A harbor with multiple sailboats and a bridge in the background.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

Harbor Island

Saranpreet

₹19,752 total

includes taxes & fees

30 Aug - 31 Aug

Studio Suite, 1 King Bed with Sofa bed, Balcony | View from room

2. Sheraton San Diego Resort

Harbor Island

Andre

₹23,356 total

includes taxes & fees

4 Aug - 5 Aug

3. Hampton Inn & Suites San Diego Airport Liberty Station

0.7 km from Harbor Island

Brenda

₹18,217 total

includes taxes & fees

30 Aug - 31 Aug

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

1 km from Harbor Island

Julie

₹25,118 total

includes taxes & fees

27 Aug - 28 Aug

5. Holiday Inn Express San Diego Airport - Old Town by IHG

2.9 km from Harbor Island

Tirthankar

₹17,047 total

includes taxes & fees

3 Aug - 4 Aug

Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

6. Best Western Yacht Harbor Hotel

1.7 km from Harbor Island

Natalia

₹16,858 total

includes taxes & fees

1 Sept - 2 Sept

7. Comfort Inn San Diego Airport At The Harbor

2 km from Harbor Island

adele

₹13,928 total

includes taxes & fees

31 Aug - 1 Sept

8. Wyndham Garden San Diego Near SeaWorld

3.3 km from Harbor Island

marissa

₹13,717 total

includes taxes & fees

30 Aug - 31 Aug

9. Humphreys Half Moon Inn

1.8 km from Harbor Island

alex

₹22,189 total

includes taxes & fees

1 Sept - 2 Sept

10. Comfort Inn San Diego Old Town

Old Town San Diego, 2.9 km from Harbor Island

Jessica

₹12,153 total

includes taxes & fees

23 Aug - 24 Aug

11. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.3 km from Harbor Island

Allan

₹15,692 total

includes taxes & fees

24 Aug - 25 Aug

3 restaurants; breakfast, lunch and dinner served

12. Wyndham San Diego Bayside

3.3 km from Harbor Island

Juanita

₹21,138 total

includes taxes & fees

2 Aug - 3 Aug

13. Bay Club Hotel & Marina

2 km from Harbor Island

Sandra

₹18,849 total

includes taxes & fees

1 Sept - 2 Sept

14. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.7 km from Harbor Island

Laura

₹17,177 total

includes taxes & fees

16 Aug - 17 Aug

Studio Suite, 1 King Bed, Courtyard View | View from room

15. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3.4 km from Harbor Island

Dominador

₹22,388 total

includes taxes & fees

18 Aug - 19 Aug

16. Hampton Inn San Diego/Mission Valley

4.4 km from Harbor Island

Julie

₹14,296 total

includes taxes & fees

31 Aug - 1 Sept

17. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 3 km from Harbor Island

Daniel

₹15,342 total

includes taxes & fees

23 Aug - 24 Aug

18. Best Western Seven Seas

5.5 km from Harbor Island

John

₹9,276 total

includes taxes & fees

2 Aug - 3 Aug

19. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.3 km from Harbor Island

Andrea

₹16,274 total

includes taxes & fees

31 Aug - 1 Sept

20. Comfort Inn Sea World Area

3.3 km from Harbor Island

Othoniel

₹12,582 total

includes taxes & fees

23 Aug - 24 Aug

View all properties

Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

See properties

A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

See properties

A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

See properties

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

See properties

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

See properties

Top Harbor Island Hotel Reviews

Paradise Point Resort & Spa

8/10 Good

"everything we needed was right there on property."

The DEXTRO Little Italy, BW Premier Collection

10/10 Excellent

"The staff is great! They are so helpful, kind, nice, and always have a smile on their faces especially Aria shes so sweet and answered all my questions super helpful even though she was extra busy with other guests i saw that she helped us to the fullest! Thank you for giving me a great experience!"

Search Hotels in Harbor Island, San Diego

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

2. Sheraton San Diego Resort

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

5. Holiday Inn Express San Diego Airport - Old Town by IHG

6. Best Western Yacht Harbor Hotel

7. Comfort Inn San Diego Airport At The Harbor

8. Wyndham Garden San Diego Near SeaWorld

9. Humphreys Half Moon Inn

10. Comfort Inn San Diego Old Town

11. Best Western Plus Hacienda Hotel Old Town

12. Wyndham San Diego Bayside

13. Bay Club Hotel & Marina

14. Hilton Garden Inn San Diego Old Town/SeaWorld Area

15. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

16. Hampton Inn San Diego/Mission Valley

17. Fairfield Inn & Suites San Diego Old Town

18. Best Western Seven Seas

19. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

20. Comfort Inn Sea World Area

Where to stay in Harbor Island

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Harbor Island Hotel Reviews

Paradise Point Resort & Spa

Frequently asked questions

Explore a world of travel with Expedia