The Best Hotels in Harbor Island, San Diego - 2026 Updated Prices

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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

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Top Harbor Island Hotel Reviews

The Sofia Hotel

8/10 Good

"Was in town for a convention at the Convention Center which was only about a 1/2 mile / 10-15 minute walk away. Chipotle across the street was a lifesaver. Near the Balboa Theater if you’re in town to see a play/ show. Lots of restaurants in the Gaslight District. Petco Park next to Convention Center. Hotel staff friendly and helpful. Room very clean. Bed comfortable. Short bus ride for $2.50 to the airport should you choose to bypass Uber or a taxi. Only gripe I had was the TV in the room didn’t work properly and I needed maintenance to fix it each night. Otherwise, no complaints."

Sheraton San Diego Resort

8/10 Good

"Overall, we are satisfied. Front desk workers were polite and helpful and I can not understand why in other reviews there were a lot of negative comments. Parking was pricey, 55$ per night. We stayed 2 nights. There was an iron and a desk, as well as a coffee machine with coffee tablets provided, but only for one day. There were also tea packets, but you couldn’t make tea because there wasn’t a teapot. One thing I can’t understand is why hotels don't include parking and resort service fees, maybe to seem cheaper than other hotels at first glance to attract visitors."

Bay Club Hotel & Marina

8/10 Good

"The room smelled a bit musty and the sheets had stains on them. The fitness area was pretty small with old equipment. The only cardio machines were an elliptical and a bike that were both pretty old and not of real good quality. The fitness center is used by people who have boats at the marina which made it pretty busy most of the time. The small size makes it feel crowded even with only 3 people in there. The pool and hot tub are small but adequate. Parking is limited with the spots being too small for anything larger than a small crossover without obstructing adjacent spots."

Omni San Diego Hotel at the Ballpark

10/10 Excellent

"We stayed at the Omni San Diego for a work conference and couldn’t have been happier with our experience. The location is excellent—right next to the convention center and incredibly easy to access. One of the highlights was attending a Padres game and being able to use the hotel’s direct access to the ballpark, which made getting in and out effortless while avoiding the crowds. After long days at the conference, the pool was a perfect place to relax and unwind. We also enjoyed the food and drinks at the hotel’s restaurants, which exceeded our expectations. Overall, it was a fantastic stay, and we will definitely choose the Omni San Diego again on future trips."

Frequently asked questions

What's it like in Harbor Island?

Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best place to stay in Harbor Island?

Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 4-minute walk from Naval Base Coronado, and it offers a marina and 3 outdoor pools.

How many hotels should I expect to find in the Harbor Island area?

Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.

What is there to do around this San Diego neighbourhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Hotel Circle or USS Midway Museum.

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Our top choices for Harbor Island hotels

Sheraton San Diego Resort

Hilton San Diego Airport/Harbor Island

Crowne Plaza San Diego - Mission Valley by IHG

Lafayette Hotel & Club

Bahia Resort Hotel

La Jolla Shores Hotel

Embassy Suites by Hilton San Diego Bay Downtown

The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

The Alcala Hotel Mission Valley/Seaworld

Courtyard by Marriott San Diego Airport/Liberty Station

San Diego Mission Bay Resort

Best Western Plus Island Palms Hotel & Marina

Ramada by Wyndham San Diego Poway Miramar

Holiday Inn Express Hotel & Suites San Diego Otay Mesa by IHG

Wyndham San Diego Bayside

Bay Club Hotel & Marina

Wyndham Garden San Diego Near SeaWorld

Hilton San Diego Bayfront

Best Western San Diego Pacific Beach/Mission Bay

Westgate Hotel

Where to stay in Harbor Island

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Harbor Island Hotel Reviews

The Sofia Hotel

Frequently asked questions

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