The Best Hotels Closest to Shelter Island in San Diego - 2026 Updated Prices

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Our top choices for Shelter Island hotels

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

1. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

₹15,527

₹17,848 total

includes taxes & fees

9 Nov - 10 Nov

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A beach with sand dunes and a person walking.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

₹17,400

₹20,000 total

includes taxes & fees

25 Oct - 26 Oct

A balcony with a table set for two, overlooking a marina with numerous boats.

A pool area with lounge chairs and umbrellas, overlooking a marina with numerous boats.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

3. Bay Club Hotel & Marina

0.7 km from Shelter Island

Thuan

₹14,473

₹16,636 total

includes taxes & fees

28 Oct - 29 Oct

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A modern lobby with a reception desk, seating area, and a large screen.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

4. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Jaycie Nicole

₹17,700

₹20,345 total

includes taxes & fees

1 Nov - 2 Nov

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Sarah

₹13,265

₹15,247 total

includes taxes & fees

15 Nov - 16 Nov

A resort with two-story buildings, balconies, and a pool area.

A canal lined with palm trees and a row of buildings with balconies.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

6. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

₹17,509

₹22,028 total

includes taxes & fees

10 Nov - 11 Nov

A buffet with various baked goods, including muffins and bread, displayed on a marble countertop.

A marina with numerous boats, a Hilton hotel, and a view of the surrounding cityscape.

A hotel hallway with carpeted floors, recessed lighting, and a central light fixture.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

7. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

₹15,527

₹17,848 total

includes taxes & fees

8 Nov - 9 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

A modern aquarium with a celestial-themed backdrop.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

₹16,725

₹19,225 total

includes taxes & fees

8 Nov - 9 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

9. The Pearl Hotel

1.6 km from Shelter Island

Ana Livia

₹14,922

₹16,855 total

includes taxes & fees

25 Oct - 26 Oct

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

10. Sea Harbor Hotel

1.4 km from Shelter Island

Michael

₹9,430

₹10,633 total

includes taxes & fees

15 Nov - 16 Nov

A square pizza on a wooden board with a fire pit in the background.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

11. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

₹14,747

₹16,951 total

includes taxes & fees

25 Oct - 26 Oct

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A hotel room with two beds, a desk, and a chair.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

12. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Falizity

₹10,848

₹12,448 total

includes taxes & fees

15 Nov - 16 Nov

A hotel room with two beds, a view of the city, a dining area, and a large window.

A modern building with a curved facade and a sign that reads "MONSARAZ."

An outdoor seating area with wicker chairs, a wooden table, and planters with greenery.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Kaylee

₹14,747

₹16,951 total

includes taxes & fees

10 Nov - 11 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A multi-level interior with a staircase, black railings, and hanging lights.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

₹9,478

₹10,686 total

includes taxes & fees

15 Nov - 16 Nov

A marina with boats, a yacht, and a balcony with two chairs and a table.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

15. Kona Kai San Diego

0.3 km from Shelter Island

Michael

₹20,000

₹30,260 total

includes taxes & fees

28 Oct - 29 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

16. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Luis

₹9,861

₹11,137 total

includes taxes & fees

9 Nov - 10 Nov

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

17. Hotel Point Loma

1.5 km from Shelter Island

Clint

₹9,335

₹10,525 total

includes taxes & fees

20 Oct - 21 Oct

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

18. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

₹10,916

₹12,526 total

includes taxes & fees

29 Oct - 30 Oct

A modern reception area with a wooden bench and a green hedge.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

19. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

₹7,622

₹8,594 total

includes taxes & fees

18 Oct - 19 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

₹5,313

₹6,001 total

includes taxes & fees

26 Oct - 27 Oct

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,723 reviews	View
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,700 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 4,003 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,246 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,620 reviews	View

Top Shelter Island Hotel Reviews

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

8/10 Good

"The location and the room itself were great! Close to pretty much anything you need. Even a quick mini mart right across the street. Room was comfortable. The only issue I had was seeing a roach the morning of my departure, crawling by the trash can inside the room. For that alone I probably would not stay at this location again. If you need a quick overnight stay though and don’t mind a bug or two, this is the spot."

Humphreys Half Moon Inn

10/10 Excellent

"Todo bueno , limpio , limpian la habitación todos los días , la comida buena , el personal de la recepción buenos , lindo el hotel me encantó"

The Pearl Hotel

10/10 Excellent

"Bedsheets and pillows were a bit stained"

DoubleTree by Hilton San Diego Bayside

8/10 Good

"It was a very pleasant stay. Hotel was clean. Quiet area. It was close to all the places we were visiting. Close to restaurants. Really appreciated the complimentary cruise and airport shuttle. The only issue we had was when we ate dinner at the point Loma café at the hotel, the food wasn't good at all and was over priced for what you got. I would stay there again, but would not have a meal at the Cafe."

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"We loved it again"

Comfort Inn San Diego Airport At The Harbor

8/10 Good

"Location is ideal, walking distance to a lot of Restaurants and coffee shops and the harbor is across the street. The extra towels we asked for never came."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"We stay here all the time. Absolutely love it"

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent

"Staff were all very pleasant. Valet was prompt with getting your vehicle. And breakfast was delicious. The rooms are very clean and nicely decorated as is the rest of the hotel. My favorite spot was the courtyard, especially near the fireplace. I would stay here again."

Hotel Aqua Mar

10/10 Excellent

"Perfect place to stay when headed out of San Diego airport. Walking distance to the marina. Check out Mitch's for a cold beer and fish sandwich."

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Search Hotels Near Shelter Island, San Diego

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Our top choices for Shelter Island hotels

1. Hampton Inn & Suites San Diego Airport Liberty Station

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

3. Bay Club Hotel & Marina

4. Courtyard by Marriott San Diego Airport/Liberty Station

5. Best Western Plus Island Palms Hotel & Marina

6. Humphreys Half Moon Inn

7. Hilton San Diego Airport/Harbor Island

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. The Pearl Hotel

10. Sea Harbor Hotel

11. DoubleTree by Hilton San Diego Bayside

12. Best Western Yacht Harbor Hotel

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

15. Kona Kai San Diego

16. Comfort Inn San Diego Airport At The Harbor

17. Hotel Point Loma

18. Ramada by Wyndham San Diego Airport

19. Hotel Aqua Mar

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Humphreys Half Moon Inn

The Pearl Hotel

DoubleTree by Hilton San Diego Bayside

Homewood Suites by Hilton San Diego Airport/Liberty Station

Comfort Inn San Diego Airport At The Harbor

Best Western Plus Island Palms Hotel & Marina

The Monsaraz San Diego, Tapestry Collection by Hilton

Hotel Aqua Mar

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

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