Search Hotels Near Shelter Island, San Diego

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
2 Mar - 3 Mar
Tomorrow
3 Mar - 4 Mar
This weekend
6 Mar - 8 Mar
Next weekend
13 Mar - 15 Mar

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Shelter Island hotels

Terrace/patio

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
La Playa, 0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,444 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is ₹12,446
₹14,306 total
includes taxes & fees
4 Mar - 5 Mar
Bay Club Hotel & Marina
Exterior

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
La Playa, 0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,580 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ₹12,300
₹14,139 total
includes taxes & fees
8 Mar - 9 Mar
Best Western Plus Island Palms Hotel & Marina
Property grounds

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
La Playa, 1 km from Shelter Island
9.2 out of 10, Wonderful, (2,792 reviews)
"Nice hotel "
United States
Timothy
The price is ₹16,740
₹21,062 total
includes taxes & fees
8 Mar - 9 Mar
Humphreys Half Moon Inn
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,318 reviews)
"Our room was clean, well stocked staff was great & very comfortable bed."
United States
Benny
The price is ₹16,201
₹18,623 total
includes taxes & fees
1 Apr - 2 Apr
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,731 reviews)
"Clean, quiet, helpful staff and simple airport transfers. "
United States
Jill
The price is ₹15,932
₹18,313 total
includes taxes & fees
3 Apr - 4 Apr
Hampton Inn & Suites San Diego Airport Liberty Station
Front of property

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,006 reviews)
"Lovely spot would stay again "
United States
danixa
The price is ₹13,224
₹14,936 total
includes taxes & fees
1 Apr - 2 Apr
The Pearl Hotel
Gift shop

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,007 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel
Lobby

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,000 reviews)
" The hotel is very clean, and the staff are friendly and helpful"
United States
Jun
The price is ₹15,560
₹17,886 total
includes taxes & fees
2 Apr - 3 Apr
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,200 reviews)
"Friendly staff, clean rooms and beautiful views. Location was great for cruise port. "
United States
Claudia
The price is ₹16,656
₹19,146 total
includes taxes & fees
8 Mar - 9 Mar
Hilton San Diego Airport/Harbor Island
View from room

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (681 reviews)
"Staff was very friendly and accommodating Rooms are clean and fresh Fun games in the courtyard "
United States
Lucas
The price is ₹14,927
₹17,158 total
includes taxes & fees
2 Apr - 3 Apr
The Monsaraz San Diego, Tapestry Collection by Hilton
Water view

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
La Playa, 0.2 km from Shelter Island
8.2 out of 10, Very good, (1,001 reviews)
"Nice staff"
United States
Erika
The price is ₹17,395
₹25,453 total
includes taxes & fees
8 Mar - 9 Mar
Kona Kai San Diego
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,756 reviews)
"Well stay again love the location"
United States
Lynette
The price is ₹9,917
₹11,380 total
includes taxes & fees
5 Mar - 6 Mar
Best Western Yacht Harbor Hotel
Bar (on property)

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1,005 reviews)
"Staff were great. Room in the front building was great. "
United States
Gretchen S
The price is ₹14,177
₹16,296 total
includes taxes & fees
2 Apr - 3 Apr
DoubleTree by Hilton San Diego Bayside
Exterior

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,330 reviews)
"Spotless! Very kind and attentive staff at checkin! Very impressed and will be back! "
United States
Michelle
The price is ₹9,976
₹11,267 total
includes taxes & fees
10 Mar - 11 Mar
Comfort Inn San Diego Airport At The Harbor
Room, 1 King Bed, Non Smoking (Harbor View) | Beach/ocean view

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,008 reviews)
"Very nice clean and friendly staff"
United States
ELIZABETH
The price is ₹9,393
₹10,778 total
includes taxes & fees
10 Mar - 11 Mar
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (384 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma
Exterior detail

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,000 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar
Suite, 1 Bedroom | In-room safe, individually decorated, individually furnished, desk

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,002 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego
Lobby sitting area

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (435 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel
Property grounds

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,003 reviews)
"Great location, staff was so friendly and courteous, and amazing views!"
United States
Katrina
The price is ₹19,616
₹22,117 total
includes taxes & fees
8 Mar - 9 Mar
The Inn at Sunset Cliffs
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Terrace/patio
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,444 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,580 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,792 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,318 reviews
View
Lobby
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,731 reviews
View

Top Shelter Island Hotel Reviews

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside

10/10 Excellent
"Clean beautifull excellent service"
Jessica 1-night trip
Posted 1 day ago
DoubleTree by Hilton San Diego Bayside

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 41 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 41 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Explore a world of travel with Expedia