What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, San Diego Mission Bay Resort is one of the top choices for your stay in Mission Bay. This resort offers a full-service spa and 2 restaurants. Other good options for your stay in the neighbourhood include Paradise Point Resort & Spa and The Dana on Mission Bay .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

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Our top choices for Mission Bay hotels

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

San Diego Mission Bay Resort

Mission Bay

Lance

₹35,531 total

includes taxes & fees

29 Jun - 30 Jun

3 outdoor pools, pool cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Yesenia

₹25,039 total

includes taxes & fees

17 Jun - 18 Jun

5 outdoor pools, a heated pool, pool umbrellas, pool loungers

Paradise Point Resort & Spa

Mission Bay

Myesha

₹34,333 total

includes taxes & fees

18 Jun - 19 Jun

2 outdoor pools, a heated pool, pool loungers

The Dana on Mission Bay

Mission Bay

Jamie

₹26,676 total

includes taxes & fees

17 Jun - 18 Jun

Crowne Plaza San Diego - Mission Valley by IHG

4 km from Mission Bay

amanda

₹14,136 total

includes taxes & fees

29 Jun - 30 Jun

3 bars/lounges, lobby lounge, cocktail bar, cocktail bar

Lafayette Hotel & Club

8.1 km from Mission Bay

Cuauhtemoc

₹27,222 total

includes taxes & fees

17 Jun - 18 Jun

3 restaurants; breakfast, lunch and dinner served

Wyndham San Diego Bayside

8 km from Mission Bay

Carlos

₹21,075 total

includes taxes & fees

29 Jun - 30 Jun

Embassy Suites by Hilton San Diego Bay Downtown

8.7 km from Mission Bay

Francesca Elisa

₹28,853 total

includes taxes & fees

29 Jun - 30 Jun

Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Amelia

₹19,132 total

includes taxes & fees

28 Jun - 29 Jun

Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Hector

₹13,010 total

includes taxes & fees

16 Jun - 17 Jun

Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.7 km from Mission Bay

Rebecca

₹17,405 total

includes taxes & fees

16 Jun - 17 Jun

Courtyard by Marriott San Diego Airport/Liberty Station

5 km from Mission Bay

Patricia

₹21,309 total

includes taxes & fees

29 Jun - 30 Jun

The Alcala Hotel Mission Valley/Seaworld

3.6 km from Mission Bay

Brittney

₹11,550 total

includes taxes & fees

16 Jun - 17 Jun

Hard Rock Hotel San Diego

Gaslamp Quarter, 9.7 km from Mission Bay

Marcos

₹23,533 total

includes taxes & fees

17 Jun - 18 Jun

Premium bedding, pillow-top beds, laptop workspace, free WiFi

The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 9.6 km from Mission Bay

Pooja

₹19,944 total

includes taxes & fees

29 Jun - 30 Jun

Outdoor pool, open 7:00 AM to 10:00 PM, free pool cabanas, pool loungers

Hilton Garden Inn San Diego Downtown/Bayside

7.4 km from Mission Bay

Diem

₹20,708 total

includes taxes & fees

1 Jul - 2 Jul

Hilton San Diego Bayfront

10 km from Mission Bay

Tristin

₹26,156 total

includes taxes & fees

5 Jul - 6 Jul

Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

Patricia

₹18,736 total

includes taxes & fees

29 Jun - 30 Jun

GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Tyson

₹12,693 total

includes taxes & fees

16 Jun - 17 Jun

Bay Club Hotel & Marina

6.8 km from Mission Bay

Teresa

₹19,838 total

includes taxes & fees

30 Jun - 1 Jul

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

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Top Mission Bay Hotel Reviews

Days Inn by Wyndham San Diego Hotel Circle

10/10 Excellent

"More than 1 washer and dryer and able to multiple loads at once. Facility was nice and well kept and room was also neat with microwave and mini fridge."

Hotel del Coronado, Curio Collection by Hilton

8/10 Good

"The concierge desk wasn't staffed in the morning around 9 am, and I was asked by another staff member to wait, as that staff member also told me that the concierge was the only place in the hotel knowledgeable about lost and found items. After waiting for more than 10 minutes, I asked the staff again, and they then gave me a phone number for the concierge. When I called the concierge, I was told that the sunhat we had forgotten at a hotel restaurant was not not found; apparently, it was not turned in by the restaurant. Service in general at the hotel was very slow and unattentive, including at the restaurant and at check-in and check-out. Signage was poor, so it was hard to find any amenities or restaurants or even the breakfast. The Victorian King room seemed overpriecd and had only windows in the sitting area, looking over the passenger loading area (without any view of the ocean), and had no windows in the bedroom area or bathroom. It also had a bad step between the sitting area and the bedroom area which made me trip. We then put "warning pillows" there as the carpeting made the step blend in. The posted firepit event was not available to us when we showed up as we were told at the firepit that we hadn't made a reservation, which we didn't realize we had to make as hotelguests, as no one had brought it up at check-in. Parking, unloading, and dealing with the luggage were all extremely complicated and time-consuming. I don't think we will be back."

Sheraton San Diego Resort

10/10 Excellent

"My stay here was amazing, the environment, staff, the cleanliness of the hotel were on point. The buffet, was great little pricey but worth it. I do plan to return in the near future, room are spacious , comfortable beds, pool area neat, and clean my jacuzzi soak was great. Again i had a wonderful time here."

Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Paradise Point Resort & Spa

The Dana on Mission Bay

Crowne Plaza San Diego - Mission Valley by IHG

Lafayette Hotel & Club

Wyndham San Diego Bayside

Embassy Suites by Hilton San Diego Bay Downtown

Holiday Inn Express San Diego Airport - Old Town by IHG

Wyndham Garden San Diego Near SeaWorld

Best Western Plus Hacienda Hotel Old Town

Courtyard by Marriott San Diego Airport/Liberty Station

The Alcala Hotel Mission Valley/Seaworld

Hard Rock Hotel San Diego

The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

Hilton Garden Inn San Diego Downtown/Bayside

Hilton San Diego Bayfront

Hampton Inn & Suites San Diego Airport Liberty Station

GreenTree Inn San Diego Mission Bay

Bay Club Hotel & Marina

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Ocean Beach

Top Mission Bay Hotel Reviews

Days Inn by Wyndham San Diego Hotel Circle

Frequently asked questions