Search Hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
1 May - 2 May
Tomorrow
2 May - 3 May
This weekend
1 May - 3 May
Next weekend
8 May - 10 May

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,430 reviews)
"Staff were very friendly and accommodating The resort was beautiful and location was amazing"
United States
Valerie
The price is ₹18,889
₹26,731 total
includes taxes & fees
10 May - 11 May
San Diego Mission Bay Resort
5 outdoor pools, a heated pool, pool umbrellas, pool loungers

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,558 reviews)
"Everything in the hotel is especial recommend 100% amazing place familiar, best place for relaxing "
United States
Rolando
The price is ₹19,748
₹27,722 total
includes taxes & fees
10 May - 11 May
Paradise Point Resort & Spa
3 outdoor pools, pool cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,627 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is ₹16,990
₹24,551 total
includes taxes & fees
10 May - 11 May
Hyatt Regency Mission Bay Spa and Marina
2 outdoor pools, a heated pool, pool loungers

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,312 reviews)
"My family and I had a great time, friendly staff "
United States
Brandon
The price is ₹16,990
₹21,711 total
includes taxes & fees
10 May - 11 May
The Dana on Mission Bay
Studio Suite, 1 King Bed with Sofa bed, Balcony | View from room

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,503 reviews)
"Great stay and family friendly "
United States
Gregory
The price is ₹14,712
₹21,712 total
includes taxes & fees
14 May - 15 May
Sheraton San Diego Resort
Lobby

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,267 reviews)
"Clean room, nice staff, a simple breakfast, and free parking on site."
United States
Nicole
The price is ₹11,602
₹13,197 total
includes taxes & fees
12 May - 13 May
Best Western Americana Inn
Exterior

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,053 reviews)
"It was clean and convenient to the airport."
United States
Joey L
The price is ₹13,374
₹15,373 total
includes taxes & fees
5 May - 6 May
Holiday Inn Express San Diego Airport - Old Town by IHG
Exterior

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,557 reviews)
"Great place and walking distance to many different places. Stayed before getting on a cruise."
United States
Lawrence
The price is ₹14,442
₹16,600 total
includes taxes & fees
12 May - 13 May
Bay Club Hotel & Marina
Breakfast, lunch, dinner served; Mediterranean cuisine

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (2,037 reviews)
"Family friendly with many onsite activities and near by dinning options "
United States
samantha
The price is ₹16,055
₹23,732 total
includes taxes & fees
17 May - 18 May
Bahia Resort Hotel
Down duvets, Select Comfort beds, desk, laptop workspace

Ramada by Wyndham San Diego Poway Miramar

Ramada by Wyndham San Diego Poway Miramar
2.0 star property
24.7 km from Mission Bay
7.0 out of 10, Good, (1,003 reviews)
"Quick to checking in nice staff and breakfast was good there was plenty of parking lot to park"
United States
Ruffa Regina
The price is ₹8,838
₹9,721 total
includes taxes & fees
10 May - 11 May
Ramada by Wyndham San Diego Poway Miramar
Exterior

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,861 reviews)
"Nice staff, so clean, very pleasant stay."
United States
Rachel
The price is ₹14,715
₹16,886 total
includes taxes & fees
20 May - 21 May
Old Town Inn
Lobby

Pleasant Inn

Pleasant Inn
2.5 star property
8 km from Mission Bay
8.6 out of 10, Excellent, (1,381 reviews)
" Clean room friendly staff"
Canada
Laurent
The price is ₹8,868
₹10,177 total
includes taxes & fees
18 May - 19 May
Pleasant Inn
Lobby

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,210 reviews)
"Room was clean hotel was close to beach & restaurant "
United States
Andrea
The price is ₹10,730
₹12,334 total
includes taxes & fees
10 May - 11 May
Wyndham Garden San Diego Near SeaWorld
Lobby sitting area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,059 reviews)
"Great hotel and in a great location "
United States
Danielle
The price is ₹9,149
₹10,516 total
includes taxes & fees
26 May - 27 May
GreenTree Inn San Diego Mission Bay
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
5 km from Mission Bay
9.2 out of 10, Wonderful, (1,306 reviews)
"Very clean and very friendly staff. Love the bar in the lobby"
United States
William
The price is ₹16,799
₹19,309 total
includes taxes & fees
25 May - 26 May
Courtyard by Marriott San Diego Airport/Liberty Station
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very good, (1,849 reviews)
"Very good breakfast offered; room was clean and comfortable; free parking; great area, close to downtown, Mission Beach and Liberty market. "
United States
Jeffrey
The price is ₹9,098
₹10,440 total
includes taxes & fees
5 May - 6 May
Best Western Yacht Harbor Hotel
Exterior

Holiday Inn Express San Diego South - Chula Vista by IHG

Holiday Inn Express San Diego South - Chula Vista by IHG
2.5 star property
19.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,119 reviews)
"Great hotel and breakfast "
United States
Sankara
The price is ₹12,255
₹13,480 total
includes taxes & fees
25 May - 26 May
Holiday Inn Express San Diego South - Chula Vista by IHG
Terrace/patio

HYATT house San Diego/Sorrento Mesa

HYATT house San Diego/Sorrento Mesa
3.0 star property
14 km from Mission Bay
9.0 out of 10, Wonderful, (1,004 reviews)
"Breakfast was delicious and staff friendly Room was clean and spacious."
United States
Rosa
The price is ₹15,282
₹17,566 total
includes taxes & fees
8 May - 9 May
HYATT house San Diego/Sorrento Mesa
Exterior

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,415 reviews)
"Friendly staff and decent place to stay "
United States
Dennis
The price is ₹11,834
₹13,603 total
includes taxes & fees
10 May - 11 May
Hilton Garden Inn San Diego Old Town/SeaWorld Area
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,706 reviews)
"Great location, clean room plus friendly staffes."
United States
Alfred
The price is ₹16,055
₹18,455 total
includes taxes & fees
10 May - 11 May
Hampton Inn & Suites San Diego Airport Liberty Station
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

The Sofia Hotel

The Sofia Hotel

10/10 Excellent
"My stay was one night but it was good. Parking, staff and room."
Juan F 1-night trip
Posted 4 hours ago
The Sofia Hotel

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach, beach near Mission Bay Park and beach near Mission Bay are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bahia Point Beach and Bay City Brewing Co. are also worth a stop.