What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include San Diego Mission Bay Resort and The Dana on Mission Bay .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A pool area with a hot tub, lounge chairs, and umbrellas.

1. The Dana on Mission Bay

Mission Bay

elizabeth

₹20,392 total

includes taxes & fees

29 Sept - 30 Sept

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

2. San Diego Mission Bay Resort

Mission Bay

Angela

₹35,698 total

includes taxes & fees

30 Sept - 1 Oct

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

3. Paradise Point Resort & Spa

Mission Bay

Raffi

₹28,694 total

includes taxes & fees

4 Oct - 5 Oct

A resort pool with a lazy river, palm trees, and a view of the ocean.

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Linda

₹26,914 total

includes taxes & fees

30 Sept - 1 Oct

A modern building with multiple windows, outdoor seating, and a chessboard.

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Joshua

₹15,222 total

includes taxes & fees

27 Sept - 28 Sept

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

6. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Nayla

₹10,535 total

includes taxes & fees

20 Sept - 21 Sept

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

7. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

David

₹20,626 total

includes taxes & fees

28 Sept - 29 Sept

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

8. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

nishant

₹16,696 total

includes taxes & fees

21 Sept - 22 Sept

A hotel with a central courtyard, palm trees, and a fountain.

9. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.1 km from Mission Bay

Edward Palacios

₹14,367 total

includes taxes & fees

28 Sept - 29 Sept

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

10. Homewood Suites by Hilton San Diego Airport/Liberty Station

5.3 km from Mission Bay

Orlyn

₹22,427 total

includes taxes & fees

28 Sept - 29 Sept

An outdoor seating area with a fire feature, surrounded by palm trees and modern buildings.

11. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.2 km from Mission Bay

Demetrius

₹17,927 total

includes taxes & fees

20 Sept - 21 Sept

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

12. Sheraton San Diego Resort

6 km from Mission Bay

Rosemarie

₹23,396 total

includes taxes & fees

27 Sept - 28 Sept

13. Comfort Inn Sea World Area

2.9 km from Mission Bay

Rick

₹12,654 total

includes taxes & fees

22 Sept - 23 Sept

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

14. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 4.1 km from Mission Bay

David

₹15,779 total

includes taxes & fees

27 Sept - 28 Sept

An outdoor lounge area with seating, a fire feature, and a pool in the background.

15. Town and Country San Diego

5.2 km from Mission Bay

Sol

₹26,545 total

includes taxes & fees

18 Sept - 19 Sept

A living room with a large window, a flat-screen TV, and a patterned rug.

16. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Moises

₹10,512 total

includes taxes & fees

20 Sept - 21 Sept

A hotel breakfast area with a long counter displaying various food items, including fruits, pastries, and a coffee station.

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Philomena

₹14,504 total

includes taxes & fees

1 Oct - 2 Oct

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

18. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Faleoalii Iereneo

₹15,817 total

includes taxes & fees

23 Sept - 24 Sept

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

19. Old Town Inn

3.5 km from Mission Bay

Layne

₹15,644 total

includes taxes & fees

15 Sept - 16 Sept

An outdoor patio with a stone fire pit, outdoor seating, string lights, and a tall, narrow heater.

20. Embassy Suites by Hilton San Diego La Jolla

University City, 11 km from Mission Bay

Sarineh

₹25,036 total

includes taxes & fees

28 Sept - 29 Sept

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A pier at sunset with people sitting and standing, waves crashing below.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

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Top Mission Bay Hotel Reviews

Manchester Grand Hyatt San Diego

10/10 Excellent

"The breakfast was amazing. So good. Room extra clean Rosa from housekeeping was exceptionally attentive."

California Suites Hotel

10/10 Excellent

"We have been staying at this hotel on three occasions during this year. It’s very much worth the price. Very helpful and nice staff. As much as you can drink coffee in the lobby area all day. Ample parking. There is no restaurant at the hotel, but several restaurants in the area, my favorite is the STP burger place a full 50 meter walk to the east. There is also a 24 hour minimart beside the hotel. The pool area is not very big and it only has four sun beds, two tables with fixed benches and sunshade and about 5 chairs, During our last stay, we used the pool area 4 or 5 times, and it was newer a problem getting sun beds or chairs. Avoid getting one of the rooms adjacent to the side entry’s. The hotels main entrance is closed during the night, and some people have the habit of slamming those metal gates shut. I will surely be staying there again for my next trip to the area."

Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

2. San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

6. Wyndham Garden San Diego Near SeaWorld

7. Hampton Inn & Suites San Diego Airport Liberty Station

8. Holiday Inn Express San Diego - SeaWorld Area by IHG

9. Hilton Garden Inn San Diego Old Town/SeaWorld Area

10. Homewood Suites by Hilton San Diego Airport/Liberty Station

11. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

12. Sheraton San Diego Resort

13. Comfort Inn Sea World Area

14. Fairfield Inn & Suites San Diego Old Town

15. Town and Country San Diego

16. GreenTree Inn San Diego Mission Bay

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

18. Holiday Inn Express San Diego Airport - Old Town by IHG

19. Old Town Inn

20. Embassy Suites by Hilton San Diego La Jolla

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Ocean Beach

Top Mission Bay Hotel Reviews

Manchester Grand Hyatt San Diego

Frequently asked questions