A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

San Juan Island Hotels from โ‚น7,026

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
11 Sept - 12 Sept
Tomorrow
12 Sept - 13 Sept
This weekend
11 Sept - 13 Sept
Next weekend
18 Sept - 20 Sept

Filter by

Star rating

Guest rating

Our top choices for San Juan Island hotels

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Charles
โ‚น9,277
โ‚น10,265 total
includes taxes & fees
1 Oct - 2 Oct
The Orca Inn

2. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
James
โ‚น22,549
โ‚น24,884 total
includes taxes & fees
15 Sept - 16 Sept
Trumpeter Inn

3. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
United States
Nicco
โ‚น20,445
โ‚น23,689 total
includes taxes & fees
12 Oct - 13 Oct
Roche Harbor Resort

4. Discovery Inn

Discovery Inn
Friday Harbor
United States
Victoria
โ‚น15,586
โ‚น17,246 total
includes taxes & fees
12 Oct - 13 Oct
Discovery Inn

5. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
โ‚น28,253
โ‚น31,178 total
includes taxes & fees
8 Oct - 9 Oct
Snug Harbor Resort

6. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
โ‚น16,140
โ‚น17,859 total
includes taxes & fees
4 Oct - 5 Oct
Friday Harbor Suites

7. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Nicole
โ‚น21,953
โ‚น24,291 total
includes taxes & fees
1 Oct - 2 Oct
Earthbox Inn & Spa

8. Saturn's Return

Saturn's Return
Friday Harbor
United States
Margaret
โ‚น30,358
โ‚น33,500 total
includes taxes & fees
14 Sept - 15 Sept
Saturn's Return

9. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
โ‚น15,272
โ‚น16,898 total
includes taxes & fees
1 Oct - 2 Oct
Bird Rock Hotel

10. Friday Harbor Grand B&B

Friday Harbor Grand B&B
Friday Harbor
United States
Andrew
โ‚น36,284
โ‚น40,148 total
includes taxes & fees
22 Sept - 23 Sept
Friday Harbor Grand B&B

11. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Robert
โ‚น37,711
โ‚น41,728 total
includes taxes & fees
6 Oct - 7 Oct
Friday Harbor House

12. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
โ‚น15,473
โ‚น17,121 total
includes taxes & fees
12 Oct - 13 Oct
Tucker House Inn

13. Deer Harbor Inn

Deer Harbor Inn
Deer Harbor
United States
Nemo
โ‚น21,571
โ‚น23,804 total
includes taxes & fees
17 Sept - 18 Sept
Deer Harbor Inn

14. The Marina Inn

The Marina Inn
Anacortes
United States
jeffrey
โ‚น14,742
โ‚น16,539 total
includes taxes & fees
24 Sept - 25 Sept
The Marina Inn

15. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
United States
Diane
โ‚น17,085
โ‚น18,854 total
includes taxes & fees
1 Oct - 2 Oct
Lopez Islander Resort

16. Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn
Anacortes
United States
Lisa
โ‚น9,363
โ‚น10,385 total
includes taxes & fees
4 Oct - 5 Oct
Anacortes Ship Harbor Inn

17. The Edenwild Boutique Inn

The Edenwild Boutique Inn
Lopez Island
United States
Frances
โ‚น21,962
โ‚น24,236 total
includes taxes & fees
15 Sept - 16 Sept
The Edenwild Boutique Inn

18. Anaco Bay Inn

Anaco Bay Inn
Anacortes
United States
Theresa
โ‚น9,449
โ‚น10,479 total
includes taxes & fees
14 Sept - 15 Sept
Anaco Bay Inn

19. San Juan Motel

San Juan Motel
Anacortes
United States
Scott
โ‚น7,159
โ‚น7,939 total
includes taxes & fees
13 Sept - 14 Sept
San Juan Motel

20. Rosario Resort

Rosario Resort
Eastsound
United States
David
โ‚น12,619
โ‚น16,311 total
includes taxes & fees
12 Oct - 13 Oct
Rosario Resort
View all properties
Save an average of 15% on thousands of hotels when you're signed in

Stay near popular San Juan Island attractions

A marina with boats docked, surrounded by forested hills and a town with buildings.

Roche Harbor Marina

9.4/10 (332 reviews)
Explore the waterfront in Roche Harbor with a trip to Roche Harbor Marina. While you're in the area, stroll along the seaside.
See properties
A lighthouse on a rocky coastline with the ocean in the foreground.

Lime Kiln Point State Park

9.6/10 (317 reviews)
Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.
See properties
A lighthouse on a rocky cliff by the sea.

San Juan Island National Historic Park

9.4/10 (184 reviews)
You can learn about the history of Friday Harbor when you stop by San Juan Island National Historic Park. While you're in the area, stroll along the waterfront.
See properties
People preparing kayaks on a riverbank with a small office and a red-roofed building in the background.

San Juan County Park

9.0/10 (87 reviews)
A hotspot for kayakers, this scenic and diverse campsite is the perfect retreat for both those wanting to relax and adventurists.
See properties
A landscaped garden with geometric hedges, a flagpole with a flag, and a body of water in the background.

English Camp

9.2/10 (153 reviews)
More than 150 years ago, the British Army prepared for battle on this site during the Pig War. Now, itโ€™s a thought-provoking homage to the islandsโ€™ dramatic history.
See properties

San Juan Islands Sculpture Park

8.8/10 (144 reviews)
Explore the great outdoors at San Juan Islands Sculpture Park, a lovely green space in Roche Harbor. While you're in the area, stroll along the seaside.
See properties

Whale Museum

8.8/10 (89 reviews)
You can spend an afternoon studying the exhibits at Whale Museum during your trip to Friday Harbor. While you're in the area, stroll along the waterfront.
See properties

San Juan Islands Museum of Art

8.4/10 (22 reviews)
You can spend an afternoon exploring the galleries in San Juan Islands Museum of Art during your travels in Friday Harbor. While you're in the area, stroll along the waterfront.
See properties

Learn more about San Juan Island

San Juan Island entices visitors with its quaint harbor towns, forest trails and the chance to see a range of wildlife, including endangered orcas.

See all hotels in San Juan Island
A marina with numerous boats docked, a wooden pier, and a forested hill in the background.

Top San Juan Island Hotel Reviews

Anacortes Inn

Anacortes Inn

8/10 Good
"Overall not bad, room clean. Reminded me of being in summer camp cabin. Only thing is calking on the tub poorly done, sloppy."
Carmen 2-night trip
Posted 6 hours ago
Anacortes Inn
The Orca Inn

The Orca Inn

10/10 Excellent
"Nice"
Nikolay 1-night trip
Posted 8 hours ago
The Orca Inn
Rosario Resort

Rosario Resort

8/10 Good
"The views are amazing. The resort is older but very clean. Had a great stay. The food in the cafe is excellent and reasonable!"
Lorenz 1-night trip
Posted 17 hours ago
Rosario Resort
Cap Sante Inn

Cap Sante Inn

10/10 Excellent
"nice stay, recommend it, beautiful town"
Timothy 1-night trip
Posted 1 day ago
Cap Sante Inn
Inn to the Woods B&B

Inn to the Woods B&B

10/10 Excellent
"The most charming B&B with a private hot tub, delicious breakfast, wonderful hosts, and 2 very cute dogs"
Betsy 3-night trip
Posted 1 day ago
Inn to the Woods B&B
Snug Harbor Resort

Snug Harbor Resort

10/10 Excellent
"What a beautiful peice of quiet paradise. Sunrise is beautiful by the water and we had fabulous sleep in the Cabins. Would definitely recommend!!"
Patricia 1-night trip
Posted 2 days ago
Snug Harbor Resort
Tucker House Inn

Tucker House Inn

10/10 Excellent
"Our stay was amazing! The staff is very responsive via the expedia messanger, quick check-in, super cozy room with stocked kitchen. The breakfast was great, including a to-go breakfast the day we departed - they thought of every detail. Nice location, little dog run area - I will be back!"
Paula 2-night trip
Posted 3 days ago
Tucker House Inn
Friday Harbor House

Friday Harbor House

8/10 Good
"The staff is not consistent. The restaurant greeter is not customer first. The large round table in the lobby means thereโ€™s literally nowhere to sit or congregate. Third floor has free coffee and sodas in the morning in the central area while thereโ€™s nothing on the main floor common area - for a very expensive room. Views are superb."
Heather 1-night trip
Posted 6 days ago
Friday Harbor House
Trumpeter Inn

Trumpeter Inn

10/10 Excellent
"A magical stay with amazing breakfast each day and cute farm animals to visit. Loved everything about it ๐Ÿ’—"
James 3-night trip
Posted 6 days ago
Trumpeter Inn

More cheap stays in San Juan Island

Cap Sante Inn

Cap Sante Inn

906 9th St Anacortes WA
โ‚น4,903
โ‚น7,026 total
30 Sept - 1 Oct
includes taxes & fees
8/10 Very good! (250 reviews)
Cap Sante Inn
The Orca Inn

The Orca Inn

770 Mullis St Friday Harbor WA
โ‚น9,277
โ‚น10,265 total
1 Oct - 2 Oct
includes taxes & fees
8.4/10 Very good! (137 reviews)
The Orca Inn
Auld Holland Inn

Auld Holland Inn

33575 State Route 20 Oak Harbor WA
โ‚น9,270
โ‚น10,318 total
8 Oct - 9 Oct
includes taxes & fees
Auld Holland Inn
Anacortes Inn

Anacortes Inn

3006 Commercial Ave Anacortes WA
โ‚น11,358
โ‚น12,787 total
11 Oct - 12 Oct
includes taxes & fees
8.8/10 Excellent! (602 reviews)
Anacortes Inn
Coachman Inn & Suites

Coachman Inn & Suites

32959 Highway 20 Oak Harbor WA
โ‚น12,396
โ‚น13,797 total
6 Oct - 7 Oct
includes taxes & fees
Coachman Inn & Suites
The Marina Inn

The Marina Inn

3300 Commercial Ave Anacortes WA
โ‚น14,742
โ‚น16,539 total
24 Sept - 25 Sept
includes taxes & fees
The Marina Inn

Hotels in San Juan Island with star rating

Explore a world of travel with Expedia