Photo by RebeccasRoutes

Search Cheap Hotels in Labuan Bajo

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Labuan Bajo Cheap Hotels

Our top choices for Labuan Bajo cheap hotels

Seaesta Komodo Hotel & Hostel

Seaesta Komodo Hotel & Hostel
3.0 star property
Labuan Bajo
9.4 out of 10, Exceptional, (81)
"Lovely chilled atmosphere, was busy but not crowded, great place to stay, music each night, food good"
United Kingdom
Jamie
Seaesta Komodo Hotel & Hostel

Kasuwari Hotel

Kasuwari Hotel
2.5 star property
Labuan Bajo
7.4 out of 10, Good, (18)
"Pros: friendly and very helpful stuff, affordable, convenient location and walkable to everywhere including beach and airport, ok ( not great) Wifi Cons: very very outdated. "
United States
Igor
Kasuwari Hotel

Hotel Bonne Nuit

Hotel Bonne Nuit
3.0 star property
Labuan Bajo
8.2 out of 10, Very good, (41)
"Staff were very good and could do enough, location is great for the airport, breakfast was lovely. "
United Kingdom
Ben
The price is ₹1,269
₹1,553 total
includes taxes & fees
12 Dec - 13 Dec
Hotel Bonne Nuit

Flamingo Bajo Waecicu

Flamingo Bajo Waecicu
3.0 star property
Labuan Bajo
8.0 out of 10, Very good, (28)
"Need ATM machine at the property "
Canada
Oscar
The price is ₹3,581
₹4,380 total
includes taxes & fees
11 Jan - 12 Jan 2026
Flamingo Bajo Waecicu

Flamingo Ceria

Flamingo Ceria
3.0 star property
Labuan Bajo
8.8 out of 10, Excellent, (6)
"I booked a room at Flamingo Ceria After arriving they informed me that they moved me to Flamingo Avia, a sister property. The bed was decent, the shower was tiny, but small. The AC worked. The restaurant up top had a limited menu, but it was tasty."
United States
Reyna
The price is ₹3,007
₹3,638 total
includes taxes & fees
6 Jan - 7 Jan 2026
Flamingo Ceria

Centro Bajo Hotel

Centro Bajo Hotel
3.0 star property
Labuan Bajo
9.2 out of 10, Wonderful, (21)
"The free airport transfer was super helpful and very attentive staff!"
United States
Gabriel
Centro Bajo Hotel

Harbour Komodo Hotel

Harbour Komodo Hotel
2.5 star property
Labuan Bajo
9.0 out of 10, Wonderful, (116)
"I can’t say enough about this property. Everything from start to finish was perfect. The staff rocked like no other and the hotel’s location was perfect. I will definitely stay here again "
United States
Jeff
Harbour Komodo Hotel

World BnB

World BnB
3.0 star property
Labuan Bajo
9.0 out of 10, Wonderful, (43)
"-"
Spain
Esther
World BnB

Eco Tree O'tel

Eco Tree O'tel
3.5 star property
Labuan Bajo
7.2 out of 10, Good, (104)
"Great stay!! Stayed for just 1 night after a boat trip but wished i had stayed longer to explore the area! "
United States
Christine
Eco Tree O'tel

Raffles Inn Labuan Bajo

Raffles Inn Labuan Bajo
3.0 star property
Labuan Bajo
7.4 out of 10, Good, (3)
"Personnel très accueillant mais qui ne parle pas bien anglais. Le personnel est très à l’écoute et très gentil. Le bémol se trouve dans le lieu qui est très bruyant et donc difficile de faire une bonne nuit"
France
Samuel
Raffles Inn Labuan Bajo
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Labuan Bajo Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What is Labuan Bajo like for travellers on a budget?
Labuan Bajo has cheap accommodation options and a variety of places to visit, making it a great getaway spot for budget travellers. You can find ways to save money while getting to know this destination, which is home to attractions such as Waecicu Beach, Labuan Bajo Port and Pede Labuan Beach.
What's the best budget-friendly accommodation in Labuan Bajo?
Based on our traveller reviews, Bajo Sunset Hostel is a top choice for a less expensive stay. Other options to stay on the cheap include Cowang Dereng Home Stay and Dorme Tree.
How many budget hotels should I expect to find in Labuan Bajo?
Expedia has 6 hotels in Labuan Bajo that are ideal if you are watching your pennies.
When is the best time for a budget trip to Labuan Bajo?
Weather will likely play an important role when you plan your trip to Labuan Bajo, but bear in mind that cheaper options are usually available when the weather isn't as good. The hottest months are usually October and November, with an average temperature of 27°C, while the coldest months are August and July, with an average of 26°C. The rainiest months in Labuan Bajo are February, January, March and December, with each month seeing an average of 303 mm of rainfall.
What is there to see and do in Labuan Bajo?
Labuan Bajo is known for its sunsets and gardens, and offers plenty to see and do without spending a fortune. You can budget for the local attractions that interest you most, and then fill your itinerary with activities that cost very little. If you're eager to get outdoors, you can enjoy the natural setting at Waecicu Beach, Pede Labuan Beach or Batu Cermin Cave.
How can I get to Labuan Bajo and get around on a budget?
Scoping out the transportation options in Labuan Bajo is a smart way to keep your trip affordable. The closest airport is Labuan Bajo (LBJ-Komodo), 2.6 mi (4.2 km) away. Labuan Bajo might not have very many public transport options so renting a car could be an economical alternative to see the area.