𝗧𝗢𝗣 𝟭𝟬 𝗛𝗼𝘁𝗲𝗹𝘀 𝗶𝗻 Ayios Thomas (2026)

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Our top choices for Ayios Thomas hotels

A pool with a water feature, surrounded by chairs and trees.

A pool surrounded by lounge chairs and a building with multiple balconies.

A modern hotel room with a bed, a seating area, a TV mounted on the wall, and a view of the outdoors.

A pathway leading to a building with a mountainous backdrop.

1. Idi Hotel

Faistos

Erin

₹7,578

₹8,606 total

includes taxes & fees

25 Sept - 26 Sept

A stone building with a wooden door and a small archway. There is a tree with purple flowers in front of the building.

An aerial view of a coastal area with a beach, a road, and a row of buildings with a pool.

A rustic room with a wooden staircase, a bed with a patterned bedspread, a dining table, and a painting on the wall.

A rustic stone room with a wooden bed, a fireplace, and a wooden table with a plate.

2. Traditional Cretan Houses

Heraklion

Eric

₹4,968

₹5,656 total

includes taxes & fees

13 Oct - 14 Oct

A hotel entrance with a clear sign reading "sofia hotel".

A hotel room with two beds, a small table with a basket of fruit, a chair, and a nightstand with a lamp.

A spacious lobby with multiple seating areas, a fireplace, and a staircase leading to upper floors.

A pool area with lounge chairs, a lifebuoy, and outdoor seating.

3. Sofia Hotel

Nea Alikarnassos

Alan

₹7,374

₹8,949 total

includes taxes & fees

13 Oct - 14 Oct

A swimming pool with lounge chairs and a gazebo, surrounded by a stone wall and a mountain backdrop.

A stone building with a small window and a door, surrounded by natural vegetation and a dirt path.

A dining area with a table set for two, a sofa, and a view of the outdoors.

A bedroom with a bed, a wooden headboard, and a view of an outdoor seating area through large windows.

4. Aetovigla Traditional Guest Houses

Malevizi

Monica

₹9,367

₹10,886 total

includes taxes & fees

1 Oct - 2 Oct

A modern living room with a glass console table, two black sofas, a small round table with a plant, and a decorative wall piece.

A hotel entrance with a sign reading 'PASIPHAE HOTEL,' glass doors, and a visible interior with seating.

A keypad door lock with a red light indicator, a numeric keypad, and a bell button.

A bathroom with a toilet, a sink, and a shower curtain.

5. Pasiphae Self Hotel

Heraklion

Chang Zhong

₹3,898

₹4,992 total

includes taxes & fees

3 Oct - 4 Oct

A modern outdoor seating area with wicker furniture, large windows offering a city view, and a ceiling with recessed lighting.

A hotel room with a large bed, a desk with a computer, a TV, and a shower area.

A spacious indoor area with multiple tables and chairs, large windows offering views of the city, and a ceiling with exposed beams.

An outdoor patio with tables and chairs, a view of the cityscape, and a building with a modern design.

6. Marvel Deluxe Rooms

Nea Alikarnassos

Daniela

₹7,737

₹9,030 total

includes taxes & fees

20 Sept - 21 Sept

Two sun loungers with cushions and a hat on one, overlooking a beach with umbrellas and people.

A modern hotel room with a large bed, a glass shower enclosure, a wooden desk, and a painting on the wall.

A modern reception area with a wooden reception desk, a grey sofa, and a small round table. There are black pendant lights and a large painting on the wall.

A modern bathroom with a white sink, a toilet, and a glass-enclosed shower area.

7. Nuovo Crete By Sea - Adults Only

Malevizi

"Property is very quiet and in a location that is a five minute walk to the main strip of restaurants, cafes, bars etc The property is only 20 mins from the airport by taxi and is associated with a beach bar a couple of mins walk away that you go to for breakfast and use of the beach and pool. All the facilities are excellent and clean and fresh. Check in was easy and any questions we had were dealt with confidently by staff."

Ifeoma

₹5,041

₹6,293 total

includes taxes & fees

13 Oct - 14 Oct

A modern hotel room with a bed, a desk, a chair, a balcony, and a bathroom.

A modern hotel room with a bed, a desk, a chair, a TV, a bathroom, and a large mirror.

A kitchen with wooden cabinets, a coffee maker, a kettle, and a mini-fridge.

A modern bathroom with a corner bathtub, wooden furniture, and a towel on a stool.

8. Alcyone Studios and Apartments

Heraklion

"We enjoyed our stay here - the staff answered messages quickly, and the room although basic had everything needed for a few nights stay including a small well equipped kitchen area (kettle, coffee machine, stove hob). Bathroom was small but perfectly useable. A bit more information about the area would be useful but that's what the internet is for. Check in was via a coded key pick up. The location is about 15 minutes walk from main areas of the town. "

Jenny

₹4,634

₹5,498 total

includes taxes & fees

29 Sept - 30 Sept

A balcony with a table and chairs, overlooking a coastal landscape with a clear view of the sea and distant hills.

A view through a window with a clear blue sky, a flag, and a pathway leading to a beach.

A swimming pool with clear water reflecting the sun.

A spacious lobby with a high ceiling, ornate chandeliers, and a stone fireplace.

9. Karteros Hotel

Hersonissos

Pantelis

₹5,621

₹6,954 total

includes taxes & fees

4 Oct - 5 Oct

A modern living room with a grey sofa, a coffee table with decorative items, a black partition, and a view of a bedroom with a bed and a wardrobe.

A modern bedroom with a large bed, a nightstand, a small table with a plant, and a balcony with a view of the city.

A modern coffee shop with a brick wall, a counter with various coffee machines, and shelves stocked with beverages.

A hotel entrance with a sign reading "STAY365 APART HOTEL" and vertical wooden slats.

10. Stay 365 Heraklion Apart Hotel

Heraklion

Ioannis

₹6,952

₹8,136 total

includes taxes & fees

7 Oct - 8 Oct

A room with a bed, a chair, a balcony, and a window with curtains.

A restaurant with high ceilings, pendant lighting, and a central bar area. Tables are arranged for dining, and there are stools near the bar.

A hotel room with a bed, a desk with a computer, a chair, a window, and a door leading to a balcony.

A multi-story hotel with balconies, a parking lot, and a view of the cityscape.

11. Asterion Hotel

Nea Alikarnassos

Antreas

₹7,314

₹8,881 total

includes taxes & fees

13 Oct - 14 Oct

A reception area with a sign for Gallery Suites, surrounded by tables and chairs, and a green wall with plants.

A modern hotel room with a large bed, a desk, a TV, and a view of the outdoors.

A stone building with a neon sign reading "démodé Café Bistro" and a wooden bench in the foreground.

An outdoor seating area with a round wooden table and blue and red upholstered chairs. Behind the seating, there is a wine rack with various bottles.

12. Chapter 02 Gallery Suites

Heraklion

Kimberly

₹8,477

₹9,873 total

includes taxes & fees

20 Sept - 21 Sept

A balcony with a table, chairs, and a potted plant.

A conference room with a long table, blue chairs, and a projection screen.

A hotel reception area with a glass partition, a receptionist, and a reception desk.

A hotel room with a large bed, a desk, a chair, and a balcony with a view of buildings.

13. Atrion Hotel

Heraklion

kevin

₹7,885

₹9,531 total

includes taxes & fees

4 Oct - 5 Oct

A swimming pool with lounge chairs and umbrellas, surrounded by stone walls and a view of the landscape.

A dining area with tables set for a meal, a stone fireplace, and a mural on the wall.

An outdoor dining area with stone flooring and a view of the countryside.

A narrow cobblestone street lined with traditional stone buildings, featuring arched doorways and balconies.

14. Arolithos Traditional Cretan Village

Malevizi

Kevin

₹4,011

₹5,676 total

includes taxes & fees

16 Sept - 17 Sept

A wooden table with drinks and lemons, overlooking a coastal landscape with houses and hills.

A poolside area with a pool, lounge chairs, and tables, surrounded by buildings and a palm tree.

An outdoor dining area with tables set for two, large windows offering a view of the city, and a covered roof structure.

A table with a glass of drink and a book, a fireplace, and a view of the outdoors.

15. Pela Mare Hotel

Malevizi

"Breakfast was really good. Plenty of choices & really pleasant staff. Check in was a breeze & he provided lots of good information for touring around including how far away (time wise) places were As a Canadian travelling overseas best purchase was a multi plug power bar (EU style) & then able to plug a converter into that - outlets were higher up on the wall & less weight balancing on the plug in."

Susan

₹5,407

₹6,378 total

includes taxes & fees

13 Oct - 14 Oct

A hotel room with a bed, a small table, and chairs, and a view of a balcony with potted plants.

A bathroom with a toilet, sink, and glass-enclosed shower.

A bathroom with a toilet, sink, and glass shower enclosure.

A hotel room with three single beds, each with a brown blanket and white linens. There are bedside lamps on each nightstand.

16. Hotel REA

Heraklion

Henri

A modern bedroom with a large bed, a built-in sink, and a mirror.

A bar with wooden shelves stocked with various bottles, a bartender, and rustic decor.

A modern two-story house with a balcony, outdoor seating, and a hanging chair.

A swimming pool with a person swimming, a stone wall, and a wooden pergola.

17. Manili Boutique Suites & Villas, an SLH Hotel

Archanes-Asterousia

Frederik

₹11,638

₹14,103 total

includes taxes & fees

13 Oct - 14 Oct

A beach with clear water, people swimming, and a sandy shore.

A poolside area with lounge chairs and a swimming pool.

A buffet with various food items and condiments.

A hotel room with two beds, each with a blue and white bedspread, and a headboard with a bird mural.

18. Sun Boutique Hotel - Adults Only

Malevizi

Earl

₹3,435

₹4,132 total

includes taxes & fees

7 Oct - 8 Oct

An outdoor seating area with tables and chairs, a pool, and a fruit basket.

A modern living room with a sofa, a coffee table, a TV, and a window with a view of the outdoors.

A children's play area with colorful chairs and tables, wooden shelves with toys, and murals on the walls.

A dining table set with plates, glasses, and cutlery, a pizza, and a sofa in the background.

19. Agapi Beach Resort - Premium All Inclusive

Malevizi

Liron

₹27,255

₹32,137 total

includes taxes & fees

5 Oct - 6 Oct

A poolside area with lounge chairs and umbrellas, overlooking a body of water.

A lobby with a checkered floor, a central table with a vase of greenery, and seating areas with patterned upholstery.

A hotel room with a large bed, a desk, and a view of the ocean.

A modern bar area with a checkered floor, bar stools, and a bar counter.

20. Aquila Atlantis Hotel

Heraklion

Philip

₹16,371

₹20,301 total

includes taxes & fees

2 Oct - 3 Oct

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Top Ayios Thomas Hotel Reviews

GDM Megaron Historical Monument Hotel

10/10 Excellent

"Great hotel. Heraklion isn’t the nicest city for tourists, but the hotel is excellent. Everything was in great shape, spotlessly clean and the service was great. More of a business hotel than a tourist location, but the standards are high. Breakfast was excellent too. All staff were really helpful."

Agapi Beach Resort - Premium All Inclusive

10/10 Excellent

"Incredibly clean, all staff were exceptional. A few different pools which were all quiet and very easy to get a sunbed. Beach and sunbeds also really clean, beach bar is great for snacks and drinks. The food is the real stand out, exceeded expectations massively. Every meal was amazing. House wine/beer is pretty average, beer especially bad in the small plastic day cups. But there is a shop on site and more shops opposite which sell various Greek beers for €1 each, Nissos was really good. Great hotel, would definitely recommend."

Marvel Deluxe Rooms

8/10 Good

".."

Sofia Hotel

8/10 Good

"Près de l’aéroport et de l’arrêt d’autobus à proximité 😏"

Ibis Styles Heraklion Central

10/10 Excellent

"Staff very helpful."

Aquila Atlantis Hotel

10/10 Excellent

"Hotel was beautiful and in a great location to the port, old town etc. Also had free parking which was a nice bonus. We spent a lot of time in the pool which was much needed respite from the heat. Only items to improve here was a bit of a disconnect between the day reception staff and the night reception staff re: our request for late checkout. Night staff said yes, then the next day, the day staff said no - so it made us scramble last minute to pack everything up. Otherwise - a great stay and would recommend!"

Peninsula Resort & Spa - All Inclusive

10/10 Excellent

"The staff was accommodating if you didn’t speak their language, they had interpreted for you. The rooms were very clean. The spa was excellent. I have nothing to compare with yet. I had a good time I would visit again."

Mirabello Hotel

8/10 Good

"Good without being spectacular. this is literally a 3 star hotel and does the job for a short stay or a convenient location stay. Located about 2 blocks from the main street it has good access to most things around there to walk to. The room was very compact, balcony would be luck to be 1m wide. The aircon was great, the water pressure was good, Vanity is so tiny and has a shelf placed directly above it, making it difficult to shave or clean your teeth. the shower is small but expected in Italy Hotels. Staff at reception were helpful on the few occaisions i interated with them. There was only a hand held shower head, and no wall mount which makes it difficult to enjoy a proper shower. Bed was quite firm and was only made up with a bottom sheet, the top sheet had to be put on yourself if you wanted it. Knowing what to expect, it was cheap and serviced my needs so would probably use again if I stayed in Heraklion again."

Infinity City Boutique Hotel

10/10 Excellent

"Excellent hotel within walking distance of the port for our short stop over in Heraklion . Staff very helpful and allowed us to have early breakfast before our ferry ."

More cheap stays in Ayios Thomas

Pela Mare Hotel

Agia Pelagia Malevizi Crete Island

₹5,407

₹6,378 total

13 Oct - 14 Oct

includes taxes & fees

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island

₹5,494

₹6,477 total

13 Oct - 14 Oct

includes taxes & fees

8.6/10 Excellent! (403 reviews)

Idi Hotel

Zaros Faistos Crete

₹7,578

₹8,606 total

25 Sept - 26 Sept

includes taxes & fees

9.2/10 Wonderful! (85 reviews)

El Greco Hotel

4, Street 1821 Heraklion Crete Island

₹7,464

₹8,720 total

22 Sept - 23 Sept

includes taxes & fees

7.4/10 Good! (815 reviews)

Kronos Hotel

2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island

₹7,699

₹8,987 total

6 Oct - 7 Oct

includes taxes & fees

8.8/10 Excellent! (646 reviews)

Thalia Bloom Villa Apartments

Marikas Kapsi Malevizi Heraklion

₹11,047

₹12,704 total

18 Sept - 19 Sept

includes taxes & fees

9.4/10 Exceptional! (30 reviews)

Frequently asked questions

Where is the best place to stay in Ayios Thomas?

Located 18.5 mi (29.8 km) from the heart of Ayios Thomas, Peninsula Resort & Spa - All Inclusive is a top choice for your stay, based on our traveller data. Two other choices for your visit to the area are GDM Megaron Historical Monument Hotel and Galaxy Hotel Iraklio. See all available top hotels, or vacation rentals in Ayios Thomas.

What are some of the best holiday rentals that Ayios Thomas has to offer?

4 Living by Semavi: This holiday home rental outside of Ayios Thomas is in the city centre, and equipped with air conditioning and free WiFi to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a stovetop, a microwave and kitchenware. See all vacation rentals in Ayios Thomas.

If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?

Yes! The majority of room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your scheduled arrival. If you have a reservation that's non-refundable, you might be able to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.

What's it like staying in Ayios Thomas?

Visitors will definitely enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2829 hotels and other accommodation options in the surrounding area. Find out more about Ayios Thomas.

What should I do while I'm visiting Ayios Thomas?

Heraklion Port is a notable place to visit in the area. You'll also find Knossos Archaeological Site and Palace of Knossos in the area. Take a look at what more there is to see and do in Expedia's Ayios Thomas guide.

What's the seasonal weather in Ayios Thomas?

The hottest months are usually July and August, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Ayios Thomas is 351 mm.

Ayios Thomas Hotels from ₹4,132

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Ayios Thomas

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Ayios Thomas hotels

1. Idi Hotel

2. Traditional Cretan Houses

3. Sofia Hotel

4. Aetovigla Traditional Guest Houses

5. Pasiphae Self Hotel

6. Marvel Deluxe Rooms

7. Nuovo Crete By Sea - Adults Only

8. Alcyone Studios and Apartments

9. Karteros Hotel

10. Stay 365 Heraklion Apart Hotel

11. Asterion Hotel

12. Chapter 02 Gallery Suites

13. Atrion Hotel

14. Arolithos Traditional Cretan Village

15. Pela Mare Hotel

16. Hotel REA

17. Manili Boutique Suites & Villas, an SLH Hotel

18. Sun Boutique Hotel - Adults Only

19. Agapi Beach Resort - Premium All Inclusive

20. Aquila Atlantis Hotel

Top Ayios Thomas Hotel Reviews

GDM Megaron Historical Monument Hotel

Agapi Beach Resort - Premium All Inclusive

Marvel Deluxe Rooms

Sofia Hotel

Ibis Styles Heraklion Central

Aquila Atlantis Hotel

Peninsula Resort & Spa - All Inclusive

Mirabello Hotel

Infinity City Boutique Hotel

More cheap stays in Ayios Thomas

Pela Mare Hotel

Mirabello Hotel

Idi Hotel

El Greco Hotel

Kronos Hotel

Thalia Bloom Villa Apartments

Frequently asked questions

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