The Best Hotels in Harbor Island, San Diego - 2026 Updated Prices

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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and USS Midway Museum are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

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Top Harbor Island Hotel Reviews

Bahia Resort Hotel

10/10 Excellent

"Timothy at the front desk was amazing, he took really good care of us. We are thankful for.his kindness and how well he is dpikg his job. The dtay was amazing as wellz everything was great"

Paradise Point Resort & Spa

2/10 Terrible

"I was very disappointed with our stay. We came hoping to create a memorable birthday experience, but unfortunately the condition of the resort did not meet our expectations. The room had spiders and other critters coming down from the ceiling, and it smelled as though it had not been properly cleaned. The floors were filthy, and it felt as if the cleaning equipment itself was not being maintained. When a place calls itself “Paradise,” that standard should apply not only to the beautiful outdoor surroundings but also to the cleanliness and comfort of the rooms. The pools also appeared unclean, which made it difficult to fully enjoy the amenities. Throughout the resort, including near several restaurants, there were strong odors that suggested grease traps or cleaning areas had not been properly maintained. We had planned to order food within the resort, but the unpleasant smells discouraged us from doing so. I believe the resort would greatly benefit from investing in additional staff and more consistent maintenance. This review is intended as constructive feedback to help improve the guest experience and bring the property up to the standard its name promises."

Hard Rock Hotel San Diego

10/10 Excellent

"The Hard Rock Hotel SD is in the heart of the Gaslamp neighborhood, making it an ideal location for exploring the area. It’s very walkable, and the hotel itself has a Nobu restaurant, as well as several other restaurants and bars. I highly recommend it! They have fantastic pool parties on the roof and there’s something to do for everyone. We stayed in a suite and it was spacious and clean. The view of the city was beautiful."

Days Inn by Wyndham San Diego Hotel Circle

6/10 Okay

"My room was very clean. I like the smell of it. The beds were super comfortable. The parking was outrageous they charge and just sometimes there’s no parking at all. The parking some of them were too small for some cars. That hotel is kind of big, overcrowded. My room was on the third floor. I didn’t like that. I hate going up and down elevators. It’s a hassle."

Frequently asked questions

What's it like in Harbor Island?

Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best place to stay in Harbor Island?

Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels should I expect to find in the Harbor Island area?

Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.

What is there to do around this San Diego neighbourhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as USS Midway Museum or Port of San Diego.

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Our top choices for Harbor Island hotels

Sheraton San Diego Resort

Hilton San Diego Airport/Harbor Island

Best Western Plus Marina Gateway Hotel

Best Western Americana Inn

Holiday Inn Express Hotel & Suites San Diego Otay Mesa by IHG

Ramada by Wyndham San Diego Poway Miramar

Comfort Inn Chula Vista San Diego South

Ayres Hotel San Diego South - Chula Vista

Hampton Inn & Suites San Diego Airport Liberty Station

La Quinta Inn by Wyndham San Diego Chula Vista

Valli Hi Motel

Pleasant Inn

Best Western Plus La Mesa San Diego

Best Western San Diego/Miramar Hotel

Embassy Suites by Hilton San Diego La Jolla

California Suites Hotel

The Rambler Hotel

Courtyard by Marriott San Diego El Cajon

Country Inn & Suites by Radisson, San Diego North, CA

Lamplighter Inn & Suites at SDSU

Where to stay in Harbor Island

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Harbor Island Hotel Reviews

Bahia Resort Hotel

Frequently asked questions

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